WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F33D4.2e.1 Sequence Name  F33D4.2e.1
Length (nt)  8862   Chromosome Location  IV: 7681357-7696923
Chromosome . Primary Identifier  IV Chromosome Location . Start  7681357
Chromosome Location . End  7696923 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F33D4.2e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002173 itr-1 F33D4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F33D4.2e F33D4.2e 8574   IV: 7681425-7681468

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F33D4.2e.1 7681357 7696923 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

33 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon131466   112   IV: 7681357-7681468 Caenorhabditis elegans
Exon131472   144   IV: 7681709-7681852 Caenorhabditis elegans
Exon131478   208   IV: 7681906-7682113 Caenorhabditis elegans
Exon131484   150   IV: 7682273-7682422 Caenorhabditis elegans
Exon131490   288   IV: 7682825-7683112 Caenorhabditis elegans
Exon131496   159   IV: 7683159-7683317 Caenorhabditis elegans
Exon131500   136   IV: 7685672-7685807 Caenorhabditis elegans
Exon131506   49   IV: 7685870-7685918 Caenorhabditis elegans
Exon131510   53   IV: 7686062-7686114 Caenorhabditis elegans
Exon131516   122   IV: 7686160-7686281 Caenorhabditis elegans
Exon131522   201   IV: 7686329-7686529 Caenorhabditis elegans
Exon131528   447   IV: 7686699-7687145 Caenorhabditis elegans
Exon131534   140   IV: 7687190-7687329 Caenorhabditis elegans
Exon131540   234   IV: 7687534-7687767 Caenorhabditis elegans
Exon131546   120   IV: 7687817-7687936 Caenorhabditis elegans
Exon131552   316   IV: 7687983-7688298 Caenorhabditis elegans
Exon131558   795   IV: 7688347-7689141 Caenorhabditis elegans
Exon131564   1351   IV: 7689192-7690542 Caenorhabditis elegans
Exon131570   122   IV: 7690615-7690736 Caenorhabditis elegans
Exon131578   102   IV: 7691379-7691480 Caenorhabditis elegans
Exon131584   264   IV: 7691552-7691815 Caenorhabditis elegans
Exon131587   33   IV: 7691894-7691926 Caenorhabditis elegans
Exon131590   115   IV: 7692131-7692245 Caenorhabditis elegans
Exon131595   176   IV: 7692298-7692473 Caenorhabditis elegans
Exon131600   142   IV: 7692521-7692662 Caenorhabditis elegans
Exon131610   169   IV: 7693381-7693549 Caenorhabditis elegans
Exon131615   647   IV: 7693593-7694239 Caenorhabditis elegans
Exon131620   272   IV: 7694285-7694556 Caenorhabditis elegans
Exon131625   316   IV: 7694922-7695237 Caenorhabditis elegans
Exon131630   188   IV: 7695289-7695476 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F33D4.2e.1 7681357 7696923 1

1 Sequence

Length
8862

1 Sequence Ontology Term

Identifier Name Description
transcript