WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F33D4.2g.1 Sequence Name  F33D4.2g.1
Length (nt)  5142   Chromosome Location  IV: 7681425-7691446
Chromosome . Primary Identifier  IV Chromosome Location . Start  7681425
Chromosome Location . End  7691446 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F33D4.2g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002173 itr-1 F33D4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F33D4.2g F33D4.2g 5142   IV: 7681425-7681468

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F33D4.2g.1 7681425 7691446 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon131468   44   IV: 7681425-7681468 Caenorhabditis elegans
Exon131474   144   IV: 7681709-7681852 Caenorhabditis elegans
Exon131480   208   IV: 7681906-7682113 Caenorhabditis elegans
Exon131486   150   IV: 7682273-7682422 Caenorhabditis elegans
Exon131492   288   IV: 7682825-7683112 Caenorhabditis elegans
Exon131498   159   IV: 7683159-7683317 Caenorhabditis elegans
Exon131504   158   IV: 7685672-7685829 Caenorhabditis elegans
Exon131512   53   IV: 7686062-7686114 Caenorhabditis elegans
Exon131518   122   IV: 7686160-7686281 Caenorhabditis elegans
Exon131524   201   IV: 7686329-7686529 Caenorhabditis elegans
Exon131530   447   IV: 7686699-7687145 Caenorhabditis elegans
Exon131536   140   IV: 7687190-7687329 Caenorhabditis elegans
Exon131542   234   IV: 7687534-7687767 Caenorhabditis elegans
Exon131548   120   IV: 7687817-7687936 Caenorhabditis elegans
Exon131554   316   IV: 7687983-7688298 Caenorhabditis elegans
Exon131560   795   IV: 7688347-7689141 Caenorhabditis elegans
Exon131566   1351   IV: 7689192-7690542 Caenorhabditis elegans
Exon131572   122   IV: 7690615-7690736 Caenorhabditis elegans
Exon131575   24   IV: 7691142-7691165 Caenorhabditis elegans
Exon131581   66   IV: 7691381-7691446 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F33D4.2g.1 7681425 7691446 1

1 Sequence

Length
5142

1 Sequence Ontology Term

Identifier Name Description
transcript