WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F33D4.2h.1 Sequence Name  F33D4.2h.1
Length (nt)  8824   Chromosome Location  IV: 7681425-7696923
Chromosome . Primary Identifier  IV Chromosome Location . Start  7681425
Chromosome Location . End  7696923 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F33D4.2h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002173 itr-1 F33D4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F33D4.2h F33D4.2h 8604   IV: 7681425-7681468

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F33D4.2h.1 7681425 7696923 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

33 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon131469   44   IV: 7681425-7681468 Caenorhabditis elegans
Exon131475   144   IV: 7681709-7681852 Caenorhabditis elegans
Exon131481   208   IV: 7681906-7682113 Caenorhabditis elegans
Exon131487   150   IV: 7682273-7682422 Caenorhabditis elegans
Exon131493   288   IV: 7682825-7683112 Caenorhabditis elegans
Exon131499   159   IV: 7683159-7683317 Caenorhabditis elegans
Exon131505   158   IV: 7685672-7685829 Caenorhabditis elegans
Exon131513   53   IV: 7686062-7686114 Caenorhabditis elegans
Exon131519   122   IV: 7686160-7686281 Caenorhabditis elegans
Exon131525   201   IV: 7686329-7686529 Caenorhabditis elegans
Exon131531   447   IV: 7686699-7687145 Caenorhabditis elegans
Exon131537   140   IV: 7687190-7687329 Caenorhabditis elegans
Exon131543   234   IV: 7687534-7687767 Caenorhabditis elegans
Exon131549   120   IV: 7687817-7687936 Caenorhabditis elegans
Exon131555   316   IV: 7687983-7688298 Caenorhabditis elegans
Exon131561   795   IV: 7688347-7689141 Caenorhabditis elegans
Exon131567   1351   IV: 7689192-7690542 Caenorhabditis elegans
Exon131573   122   IV: 7690615-7690736 Caenorhabditis elegans
Exon131574   63   IV: 7690924-7690986 Caenorhabditis elegans
Exon131580   102   IV: 7691379-7691480 Caenorhabditis elegans
Exon131586   264   IV: 7691552-7691815 Caenorhabditis elegans
Exon131592   115   IV: 7692131-7692245 Caenorhabditis elegans
Exon131597   176   IV: 7692298-7692473 Caenorhabditis elegans
Exon131602   142   IV: 7692521-7692662 Caenorhabditis elegans
Exon131607   27   IV: 7692937-7692963 Caenorhabditis elegans
Exon131612   169   IV: 7693381-7693549 Caenorhabditis elegans
Exon131617   647   IV: 7693593-7694239 Caenorhabditis elegans
Exon131622   272   IV: 7694285-7694556 Caenorhabditis elegans
Exon131627   316   IV: 7694922-7695237 Caenorhabditis elegans
Exon131632   188   IV: 7695289-7695476 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F33D4.2h.1 7681425 7696923 1

1 Sequence

Length
8824

1 Sequence Ontology Term

Identifier Name Description
transcript