WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C55F2.1b.1 Sequence Name  C55F2.1b.1
Length (nt)  1960   Chromosome Location  IV: 7882028-7900251
Chromosome . Primary Identifier  IV Chromosome Location . Start  7882028
Chromosome Location . End  7900251 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C55F2.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016957 atic-1 C55F2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C55F2.1b C55F2.1b 1785   IV: 7882067-7882088

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C55F2.1b.1 7882028 7900251 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132168   61   IV: 7882028-7882088 Caenorhabditis elegans
Exon132170   248   IV: 7882359-7882606 Caenorhabditis elegans
Exon132172   112   IV: 7883837-7883948 Caenorhabditis elegans
Exon132174   92   IV: 7885446-7885537 Caenorhabditis elegans
Exon132177   51   IV: 7886826-7886876 Caenorhabditis elegans
Exon132182   97   IV: 7891599-7891695 Caenorhabditis elegans
Exon132186   66   IV: 7892665-7892730 Caenorhabditis elegans
Exon132190   126   IV: 7892988-7893113 Caenorhabditis elegans
Exon132194   114   IV: 7893686-7893799 Caenorhabditis elegans
Exon132200   82   IV: 7894280-7894361 Caenorhabditis elegans
Exon132204   94   IV: 7894407-7894500 Caenorhabditis elegans
Exon132209   129   IV: 7894544-7894672 Caenorhabditis elegans
Exon132213   93   IV: 7894775-7894867 Caenorhabditis elegans
Exon132217   74   IV: 7895068-7895141 Caenorhabditis elegans
Exon132231   112   IV: 7898746-7898857 Caenorhabditis elegans
Exon132235   57   IV: 7898990-7899046 Caenorhabditis elegans
Exon132239   96   IV: 7899234-7899329 Caenorhabditis elegans
Exon132242   256   IV: 7899996-7900251 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C55F2.1b.1 7882028 7900251 1

1 Sequence

Length
1960

1 Sequence Ontology Term

Identifier Name Description
transcript