WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C55F2.1a.2 Sequence Name  C55F2.1a.2
Length (nt)  1564   Chromosome Location  IV: 7891380-7900257
Chromosome . Primary Identifier  IV Chromosome Location . Start  7891380
Chromosome Location . End  7900257 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C55F2.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016957 atic-1 C55F2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C55F2.1a C55F2.1a 1161   IV: 7892718-7892730

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C55F2.1a.2 7891380 7900257 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132234   111   IV: 7891380-7891490 Caenorhabditis elegans
Exon132236   97   IV: 7891599-7891695 Caenorhabditis elegans
Exon132240   66   IV: 7892665-7892730 Caenorhabditis elegans
Exon132244   126   IV: 7892988-7893113 Caenorhabditis elegans
Exon132248   114   IV: 7893686-7893799 Caenorhabditis elegans
Exon132252   51   IV: 7893978-7894028 Caenorhabditis elegans
Exon132254   82   IV: 7894280-7894361 Caenorhabditis elegans
Exon132258   94   IV: 7894407-7894500 Caenorhabditis elegans
Exon132263   129   IV: 7894544-7894672 Caenorhabditis elegans
Exon132267   93   IV: 7894775-7894867 Caenorhabditis elegans
Exon132271   74   IV: 7895068-7895141 Caenorhabditis elegans
Exon132285   112   IV: 7898746-7898857 Caenorhabditis elegans
Exon132289   57   IV: 7898990-7899046 Caenorhabditis elegans
Exon132293   96   IV: 7899234-7899329 Caenorhabditis elegans
Exon132299   262   IV: 7899996-7900257 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C55F2.1a.2 7891380 7900257 1

1 Sequence

Length
1564

1 Sequence Ontology Term

Identifier Name Description
transcript