WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C49H3.5c.1 Sequence Name  C49H3.5c.1
Length (nt)  3355   Chromosome Location  IV: 7910593-7915184
Chromosome . Primary Identifier  IV Chromosome Location . Start  7910593
Chromosome Location . End  7915184 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C49H3.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003827 ntl-4 C49H3.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C49H3.5c C49H3.5c 2385   IV: 7910646-7910681

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C49H3.5c.1 7910593 7915184 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132281   89   IV: 7910593-7910681 Caenorhabditis elegans
Exon132286   69   IV: 7910746-7910814 Caenorhabditis elegans
Exon132291   96   IV: 7910957-7911052 Caenorhabditis elegans
Exon132296   321   IV: 7911108-7911428 Caenorhabditis elegans
Exon132300   102   IV: 7911532-7911633 Caenorhabditis elegans
Exon132305   173   IV: 7911690-7911862 Caenorhabditis elegans
Exon132310   65   IV: 7911908-7911972 Caenorhabditis elegans
Exon132315   68   IV: 7912024-7912091 Caenorhabditis elegans
Exon132320   179   IV: 7912142-7912320 Caenorhabditis elegans
Exon132325   453   IV: 7912375-7912827 Caenorhabditis elegans
Exon132332   283   IV: 7912875-7913157 Caenorhabditis elegans
Exon132336   1457   IV: 7913728-7915184 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C49H3.5c.1 7910593 7915184 1

1 Sequence

Length
3355

1 Sequence Ontology Term

Identifier Name Description
transcript