WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C49H3.10a.1 Sequence Name  C49H3.10a.1
Length (nt)  3404   Chromosome Location  IV: 7916689-7924032
Chromosome . Primary Identifier  IV Chromosome Location . Start  7916689
Chromosome Location . End  7924032 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C49H3.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002080 xpo-3 C49H3.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C49H3.10a C49H3.10a 2853   IV: 7917240-7917284

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C49H3.10a.1 7916689 7924032 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132342   596   IV: 7916689-7917284 Caenorhabditis elegans
Exon132345   449   IV: 7917812-7918260 Caenorhabditis elegans
Exon132348   982   IV: 7918336-7919317 Caenorhabditis elegans
Exon132351   282   IV: 7919363-7919644 Caenorhabditis elegans
Exon132355   172   IV: 7919781-7919952 Caenorhabditis elegans
Exon132360   80   IV: 7922011-7922090 Caenorhabditis elegans
Exon132362   120   IV: 7922824-7922943 Caenorhabditis elegans
Exon132364   231   IV: 7922993-7923223 Caenorhabditis elegans
Exon132366   109   IV: 7923270-7923378 Caenorhabditis elegans
Exon132368   240   IV: 7923520-7923759 Caenorhabditis elegans
Exon132370   83   IV: 7923841-7923923 Caenorhabditis elegans
Exon132372   60   IV: 7923973-7924032 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C49H3.10a.1 7916689 7924032 -1

1 Sequence

Length
3404

1 Sequence Ontology Term

Identifier Name Description
transcript