WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C49H3.1.1 Sequence Name  C49H3.1.1
Length (nt)  3656   Chromosome Location  IV: 7928152-7933782
Chromosome . Primary Identifier  IV Chromosome Location . Start  7928152
Chromosome Location . End  7933782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C49H3.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001535 gcy-8 C49H3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C49H3.1 C49H3.1 3459   IV: 7928223-7928542

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C49H3.1.1 7928152 7933782 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132393   391   IV: 7928152-7928542 Caenorhabditis elegans
Exon132394   226   IV: 7928674-7928899 Caenorhabditis elegans
Exon132395   241   IV: 7929511-7929751 Caenorhabditis elegans
Exon132396   200   IV: 7929799-7929998 Caenorhabditis elegans
Exon132397   93   IV: 7930043-7930135 Caenorhabditis elegans
Exon132398   393   IV: 7930217-7930609 Caenorhabditis elegans
Exon132399   122   IV: 7930933-7931054 Caenorhabditis elegans
Exon132400   241   IV: 7931104-7931344 Caenorhabditis elegans
Exon132401   740   IV: 7931569-7932308 Caenorhabditis elegans
Exon132402   216   IV: 7932544-7932759 Caenorhabditis elegans
Exon132403   223   IV: 7932807-7933029 Caenorhabditis elegans
Exon132404   570   IV: 7933213-7933782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C49H3.1.1 7928152 7933782 1

1 Sequence

Length
3656

1 Sequence Ontology Term

Identifier Name Description
transcript