WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F20D12.3.1 Sequence Name  F20D12.3.1
Length (nt)  2330   Chromosome Location  IV: 7934033-7937749
Chromosome . Primary Identifier  IV Chromosome Location . Start  7934033
Chromosome Location . End  7937749 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F20D12.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000242 bbs-2 F20D12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F20D12.3 F20D12.3 2145   IV: 7934128-7934338

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F20D12.3.1 7934033 7937749 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132460   306   IV: 7934033-7934338 Caenorhabditis elegans
Exon132461   176   IV: 7934393-7934568 Caenorhabditis elegans
Exon132462   642   IV: 7934624-7935265 Caenorhabditis elegans
Exon132463   215   IV: 7935627-7935841 Caenorhabditis elegans
Exon132464   111   IV: 7935892-7936002 Caenorhabditis elegans
Exon132465   139   IV: 7936049-7936187 Caenorhabditis elegans
Exon132466   285   IV: 7936289-7936573 Caenorhabditis elegans
Exon132467   113   IV: 7937127-7937239 Caenorhabditis elegans
Exon132468   72   IV: 7937293-7937364 Caenorhabditis elegans
Exon132469   77   IV: 7937432-7937508 Caenorhabditis elegans
Exon132470   194   IV: 7937556-7937749 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F20D12.3.1 7934033 7937749 1

1 Sequence

Length
2330

1 Sequence Ontology Term

Identifier Name Description
transcript