WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42H9B.2.1 Sequence Name  Y42H9B.2.1
Length (nt)  7498   Chromosome Location  IV: 7991410-8004119
Chromosome . Primary Identifier  IV Chromosome Location . Start  7991410
Chromosome Location . End  8004119 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42H9B.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004371 rig-4 Y42H9B.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42H9B.2 Y42H9B.2 6978   IV: 7991855-7991985

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y42H9B.2.1 7991410 8004119 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132608   576   IV: 7991410-7991985 Caenorhabditis elegans
Exon132609   870   IV: 7992254-7993123 Caenorhabditis elegans
Exon132610   1801   IV: 7993738-7995538 Caenorhabditis elegans
Exon132611   564   IV: 7995982-7996545 Caenorhabditis elegans
Exon132612   1052   IV: 7996655-7997706 Caenorhabditis elegans
Exon132614   639   IV: 7997785-7998423 Caenorhabditis elegans
Exon132615   832   IV: 7999334-8000165 Caenorhabditis elegans
Exon132617   442   IV: 8001043-8001484 Caenorhabditis elegans
Exon132618   158   IV: 8001859-8002016 Caenorhabditis elegans
Exon132619   149   IV: 8002246-8002394 Caenorhabditis elegans
Exon132624   207   IV: 8003572-8003778 Caenorhabditis elegans
Exon132625   208   IV: 8003912-8004119 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y42H9B.2.1 7991410 8004119 -1

1 Sequence

Length
7498

1 Sequence Ontology Term

Identifier Name Description
transcript