WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C18F3.2c.1 Sequence Name  C18F3.2c.1
Length (nt)  5393   Chromosome Location  IV: 8062659-8084087
Chromosome . Primary Identifier  IV Chromosome Location . Start  8062659
Chromosome Location . End  8084087 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C18F3.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004732 sax-7 C18F3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C18F3.2c C18F3.2c 3996   IV: 8062732-8062780

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C18F3.2c.1 8062659 8084087 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132746   122   IV: 8062659-8062780 Caenorhabditis elegans
Exon132749   178   IV: 8063101-8063278 Caenorhabditis elegans
Exon132751   77   IV: 8063615-8063691 Caenorhabditis elegans
Exon132753   293   IV: 8064030-8064322 Caenorhabditis elegans
Exon132757   145   IV: 8067217-8067361 Caenorhabditis elegans
Exon132763   97   IV: 8070036-8070132 Caenorhabditis elegans
Exon132768   191   IV: 8074117-8074307 Caenorhabditis elegans
Exon132772   291   IV: 8074863-8075153 Caenorhabditis elegans
Exon132776   285   IV: 8075921-8076205 Caenorhabditis elegans
Exon132781   291   IV: 8076453-8076743 Caenorhabditis elegans
Exon132785   269   IV: 8076958-8077226 Caenorhabditis elegans
Exon132789   805   IV: 8077770-8078574 Caenorhabditis elegans
Exon132793   333   IV: 8078814-8079146 Caenorhabditis elegans
Exon132800   171   IV: 8081435-8081605 Caenorhabditis elegans
Exon132806   322   IV: 8082014-8082335 Caenorhabditis elegans
Exon132812   116   IV: 8082521-8082636 Caenorhabditis elegans
Exon132818   1407   IV: 8082681-8084087 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C18F3.2c.1 8062659 8084087 1

1 Sequence

Length
5393

1 Sequence Ontology Term

Identifier Name Description
transcript