WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42H9AR.4.1 Sequence Name  Y42H9AR.4.1
Length (nt)  2431   Chromosome Location  IV: 8107766-8112218
Chromosome . Primary Identifier  IV Chromosome Location . Start  8107766
Chromosome Location . End  8112218 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42H9AR.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021539 Y42H9AR.4 Y42H9AR.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42H9AR.4 Y42H9AR.4 1884   IV: 8108300-8108500

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y42H9AR.4.1 8107766 8112218 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132804   735   IV: 8107766-8108500 Caenorhabditis elegans
Exon132805   587   IV: 8108975-8109561 Caenorhabditis elegans
Exon132806   84   IV: 8109941-8110024 Caenorhabditis elegans
Exon132807   215   IV: 8110072-8110286 Caenorhabditis elegans
Exon132808   354   IV: 8110729-8111082 Caenorhabditis elegans
Exon132809   245   IV: 8111206-8111450 Caenorhabditis elegans
Exon132810   143   IV: 8111942-8112084 Caenorhabditis elegans
Exon132811   68   IV: 8112151-8112218 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y42H9AR.4.1 8107766 8112218 -1

1 Sequence

Length
2431

1 Sequence Ontology Term

Identifier Name Description
transcript