WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42G8.3a.1 Sequence Name  F42G8.3a.1
Length (nt)  1537   Chromosome Location  IV: 8143500-8148648
Chromosome . Primary Identifier  IV Chromosome Location . Start  8143500
Chromosome Location . End  8148648 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42G8.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004056 pmk-2 F42G8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42G8.3a F42G8.3a 1209   IV: 8143511-8143615

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42G8.3a.1 8143500 8148648 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132921   116   IV: 8143500-8143615 Caenorhabditis elegans
Exon132923   86   IV: 8144213-8144298 Caenorhabditis elegans
Exon132925   189   IV: 8144348-8144536 Caenorhabditis elegans
Exon132927   112   IV: 8145042-8145153 Caenorhabditis elegans
Exon132929   78   IV: 8147053-8147130 Caenorhabditis elegans
Exon132931   115   IV: 8147182-8147296 Caenorhabditis elegans
Exon132935   72   IV: 8147625-8147696 Caenorhabditis elegans
Exon132939   97   IV: 8147746-8147842 Caenorhabditis elegans
Exon132945   205   IV: 8147927-8148131 Caenorhabditis elegans
Exon132949   467   IV: 8148182-8148648 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42G8.3a.1 8143500 8148648 1

1 Sequence

Length
1537

1 Sequence Ontology Term

Identifier Name Description
transcript