WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C07G1.3a.2 Sequence Name  C07G1.3a.2
Length (nt)  2198   Chromosome Location  IV: 8177092-8188882
Chromosome . Primary Identifier  IV Chromosome Location . Start  8177092
Chromosome Location . End  8188882 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C07G1.3a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003961 pct-1 C07G1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C07G1.3a C07G1.3a 1734   IV: 8177109-8177211

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C07G1.3a.2 8177092 8188882 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133012   120   IV: 8177092-8177211 Caenorhabditis elegans
Exon133016   199   IV: 8177762-8177960 Caenorhabditis elegans
Exon133019   104   IV: 8178578-8178681 Caenorhabditis elegans
Exon133025   97   IV: 8185625-8185721 Caenorhabditis elegans
Exon133029   52   IV: 8185768-8185819 Caenorhabditis elegans
Exon133033   246   IV: 8186524-8186769 Caenorhabditis elegans
Exon133037   132   IV: 8187067-8187198 Caenorhabditis elegans
Exon133041   413   IV: 8187290-8187702 Caenorhabditis elegans
Exon133045   229   IV: 8187997-8188225 Caenorhabditis elegans
Exon133050   606   IV: 8188277-8188882 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C07G1.3a.2 8177092 8188882 1

1 Sequence

Length
2198

1 Sequence Ontology Term

Identifier Name Description
transcript