WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T09A12.3a.1 Sequence Name  T09A12.3a.1
Length (nt)  2871   Chromosome Location  IV: 8213788-8220087
Chromosome . Primary Identifier  IV Chromosome Location . Start  8213788
Chromosome Location . End  8220087 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T09A12.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003839 ocr-2 T09A12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T09A12.3a T09A12.3a 2703   IV: 8213905-8214135

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.3a.1 8213788 8220087 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133145   348   IV: 8213788-8214135 Caenorhabditis elegans
Exon133147   132   IV: 8214192-8214323 Caenorhabditis elegans
Exon133149   117   IV: 8214370-8214486 Caenorhabditis elegans
Exon133151   150   IV: 8214929-8215078 Caenorhabditis elegans
Exon133153   414   IV: 8215156-8215569 Caenorhabditis elegans
Exon133155   108   IV: 8215640-8215747 Caenorhabditis elegans
Exon133157   68   IV: 8215792-8215859 Caenorhabditis elegans
Exon133160   212   IV: 8216248-8216459 Caenorhabditis elegans
Exon133161   83   IV: 8216654-8216736 Caenorhabditis elegans
Exon133162   409   IV: 8216782-8217190 Caenorhabditis elegans
Exon133163   521   IV: 8217260-8217780 Caenorhabditis elegans
Exon133164   130   IV: 8218891-8219020 Caenorhabditis elegans
Exon133165   179   IV: 8219909-8220087 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.3a.1 8213788 8220087 -1

1 Sequence

Length
2871

1 Sequence Ontology Term

Identifier Name Description
transcript