WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T09A12.4c.1 Sequence Name  T09A12.4c.1
Length (nt)  2619   Chromosome Location  IV: 8226331-8236582
Chromosome . Primary Identifier  IV Chromosome Location . Start  8226331
Chromosome Location . End  8236582 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T09A12.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003656 nhr-66 T09A12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T09A12.4c T09A12.4c 2202   IV: 8226743-8226979

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.4c.1 8226331 8236582 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133154   649   IV: 8226331-8226979 Caenorhabditis elegans
Exon133166   274   IV: 8227030-8227303 Caenorhabditis elegans
Exon133176   320   IV: 8227670-8227989 Caenorhabditis elegans
Exon133186   353   IV: 8228039-8228391 Caenorhabditis elegans
Exon133196   72   IV: 8228447-8228518 Caenorhabditis elegans
Exon133206   151   IV: 8228785-8228935 Caenorhabditis elegans
Exon133219   74   IV: 8228995-8229068 Caenorhabditis elegans
Exon133227   84   IV: 8229249-8229332 Caenorhabditis elegans
Exon133236   314   IV: 8231523-8231836 Caenorhabditis elegans
Exon133242   85   IV: 8235825-8235909 Caenorhabditis elegans
Exon133248   169   IV: 8236035-8236203 Caenorhabditis elegans
Exon133250   74   IV: 8236509-8236582 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.4c.1 8226331 8236582 -1

1 Sequence

Length
2619

1 Sequence Ontology Term

Identifier Name Description
transcript