WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T09A12.4f.1 Sequence Name  T09A12.4f.1
Length (nt)  2627   Chromosome Location  IV: 8226337-8236602
Chromosome . Primary Identifier  IV Chromosome Location . Start  8226337
Chromosome Location . End  8236602 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T09A12.4f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003656 nhr-66 T09A12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T09A12.4f T09A12.4f 2196   IV: 8226743-8226979

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.4f.1 8226337 8236602 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133157   643   IV: 8226337-8226979 Caenorhabditis elegans
Exon133169   274   IV: 8227030-8227303 Caenorhabditis elegans
Exon133179   320   IV: 8227670-8227989 Caenorhabditis elegans
Exon133189   353   IV: 8228039-8228391 Caenorhabditis elegans
Exon133199   72   IV: 8228447-8228518 Caenorhabditis elegans
Exon133209   151   IV: 8228785-8228935 Caenorhabditis elegans
Exon133216   68   IV: 8228995-8229062 Caenorhabditis elegans
Exon133229   84   IV: 8229249-8229332 Caenorhabditis elegans
Exon133238   314   IV: 8231523-8231836 Caenorhabditis elegans
Exon133244   85   IV: 8235825-8235909 Caenorhabditis elegans
Exon133249   169   IV: 8236035-8236203 Caenorhabditis elegans
Exon133251   94   IV: 8236509-8236602 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.4f.1 8226337 8236602 -1

1 Sequence

Length
2627

1 Sequence Ontology Term

Identifier Name Description
transcript