WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T09A12.3a.1 Sequence Name  T09A12.3a.1
Length (nt)  2871   Chromosome Location  IV: 8213788-8220087
Chromosome . Primary Identifier  IV Chromosome Location . Start  8213788
Chromosome Location . End  8220087 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T09A12.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003839 ocr-2 T09A12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T09A12.3a T09A12.3a 2703   IV: 8213905-8214135

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.3a.1 8213788 8220087 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133179   348   IV: 8213788-8214135 Caenorhabditis elegans
Exon133181   132   IV: 8214192-8214323 Caenorhabditis elegans
Exon133183   117   IV: 8214370-8214486 Caenorhabditis elegans
Exon133185   150   IV: 8214929-8215078 Caenorhabditis elegans
Exon133187   414   IV: 8215156-8215569 Caenorhabditis elegans
Exon133189   108   IV: 8215640-8215747 Caenorhabditis elegans
Exon133191   68   IV: 8215792-8215859 Caenorhabditis elegans
Exon133194   212   IV: 8216248-8216459 Caenorhabditis elegans
Exon133195   83   IV: 8216654-8216736 Caenorhabditis elegans
Exon133196   409   IV: 8216782-8217190 Caenorhabditis elegans
Exon133197   521   IV: 8217260-8217780 Caenorhabditis elegans
Exon133198   130   IV: 8218891-8219020 Caenorhabditis elegans
Exon133199   179   IV: 8219909-8220087 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.3a.1 8213788 8220087 -1

1 Sequence

Length
2871

1 Sequence Ontology Term

Identifier Name Description
transcript