WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T09A12.4d.1 Sequence Name  T09A12.4d.1
Length (nt)  1980   Chromosome Location  IV: 8226743-8236050
Chromosome . Primary Identifier  IV Chromosome Location . Start  8226743
Chromosome Location . End  8236050 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T09A12.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003656 nhr-66 T09A12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T09A12.4d T09A12.4d 1980   IV: 8226743-8226979

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.4d.1 8226743 8236050 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133162   237   IV: 8226743-8226979 Caenorhabditis elegans
Exon133167   274   IV: 8227030-8227303 Caenorhabditis elegans
Exon133177   320   IV: 8227670-8227989 Caenorhabditis elegans
Exon133187   353   IV: 8228039-8228391 Caenorhabditis elegans
Exon133197   72   IV: 8228447-8228518 Caenorhabditis elegans
Exon133207   151   IV: 8228785-8228935 Caenorhabditis elegans
Exon133220   74   IV: 8228995-8229068 Caenorhabditis elegans
Exon133228   84   IV: 8229249-8229332 Caenorhabditis elegans
Exon133237   314   IV: 8231523-8231836 Caenorhabditis elegans
Exon133243   85   IV: 8235825-8235909 Caenorhabditis elegans
Exon133246   16   IV: 8236035-8236050 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.4d.1 8226743 8236050 -1

1 Sequence

Length
1980

1 Sequence Ontology Term

Identifier Name Description
transcript