WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T09A12.4g.1 Sequence Name  T09A12.4g.1
Length (nt)  1974   Chromosome Location  IV: 8226743-8236050
Chromosome . Primary Identifier  IV Chromosome Location . Start  8226743
Chromosome Location . End  8236050 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T09A12.4g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003656 nhr-66 T09A12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T09A12.4g T09A12.4g 1974   IV: 8226743-8226979

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.4g.1 8226743 8236050 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133218   237   IV: 8226743-8226979 Caenorhabditis elegans
Exon133225   274   IV: 8227030-8227303 Caenorhabditis elegans
Exon133235   320   IV: 8227670-8227989 Caenorhabditis elegans
Exon133245   353   IV: 8228039-8228391 Caenorhabditis elegans
Exon133255   72   IV: 8228447-8228518 Caenorhabditis elegans
Exon133265   151   IV: 8228785-8228935 Caenorhabditis elegans
Exon133272   68   IV: 8228995-8229062 Caenorhabditis elegans
Exon133285   84   IV: 8229249-8229332 Caenorhabditis elegans
Exon133294   314   IV: 8231523-8231836 Caenorhabditis elegans
Exon133300   85   IV: 8235825-8235909 Caenorhabditis elegans
Exon133302   16   IV: 8236035-8236050 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T09A12.4g.1 8226743 8236050 -1

1 Sequence

Length
1974

1 Sequence Ontology Term

Identifier Name Description
transcript