WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2096.4a.1 Sequence Name  D2096.4a.1
Length (nt)  1831   Chromosome Location  IV: 8361117-8363426
Chromosome . Primary Identifier  IV Chromosome Location . Start  8361117
Chromosome Location . End  8363426 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2096.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00005019 sqv-1 D2096.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2096.4a D2096.4a 1404   IV: 8361123-8361213

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2096.4a.1 8361117 8363426 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133480   97   IV: 8361117-8361213 Caenorhabditis elegans
Exon133481   118   IV: 8361315-8361432 Caenorhabditis elegans
Exon133483   156   IV: 8361627-8361782 Caenorhabditis elegans
Exon133485   351   IV: 8361829-8362179 Caenorhabditis elegans
Exon133487   292   IV: 8362265-8362556 Caenorhabditis elegans
Exon133490   817   IV: 8362610-8363426 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2096.4a.1 8361117 8363426 1

1 Sequence

Length
1831

1 Sequence Ontology Term

Identifier Name Description
transcript