WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2096.3.2 Sequence Name  D2096.3.2
Length (nt)  3013   Chromosome Location  IV: 8366521-8375371
Chromosome . Primary Identifier  IV Chromosome Location . Start  8366521
Chromosome Location . End  8375371 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2096.3.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017071 aagr-1 D2096.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2096.3 D2096.3 2811   IV: 8366754-8366918

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:D2096.3.2 8366521 8375371 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133553   174   IV: 8366521-8366694 Caenorhabditis elegans
Exon133555   169   IV: 8366750-8366918 Caenorhabditis elegans
Exon133558   103   IV: 8367467-8367569 Caenorhabditis elegans
Exon133560   240   IV: 8367910-8368149 Caenorhabditis elegans
Exon133562   98   IV: 8368197-8368294 Caenorhabditis elegans
Exon133567   217   IV: 8370325-8370541 Caenorhabditis elegans
Exon133569   251   IV: 8370592-8370842 Caenorhabditis elegans
Exon133571   120   IV: 8370900-8371019 Caenorhabditis elegans
Exon133573   198   IV: 8371065-8371262 Caenorhabditis elegans
Exon133575   303   IV: 8371310-8371612 Caenorhabditis elegans
Exon133577   248   IV: 8372033-8372280 Caenorhabditis elegans
Exon133579   114   IV: 8372325-8372438 Caenorhabditis elegans
Exon133581   142   IV: 8372486-8372627 Caenorhabditis elegans
Exon133583   243   IV: 8372894-8373136 Caenorhabditis elegans
Exon133585   65   IV: 8373294-8373358 Caenorhabditis elegans
Exon133587   76   IV: 8373402-8373477 Caenorhabditis elegans
Exon133589   252   IV: 8375120-8375371 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:D2096.3.2 8366521 8375371 1

1 Sequence

Length
3013

1 Sequence Ontology Term

Identifier Name Description
transcript