WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2096.11.3 Sequence Name  D2096.11.3
Length (nt)  3078   Chromosome Location  IV: 8388853-8393900
Chromosome . Primary Identifier  IV Chromosome Location . Start  8388853
Chromosome Location . End  8393900 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2096.11.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017078 D2096.11 D2096.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2096.11 D2096.11 2184   IV: 8389147-8389381

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2096.11.3 8388853 8393900 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133588   529   IV: 8388853-8389381 Caenorhabditis elegans
Exon133593   338   IV: 8389949-8390286 Caenorhabditis elegans
Exon133596   120   IV: 8390711-8390830 Caenorhabditis elegans
Exon133599   366   IV: 8390882-8391247 Caenorhabditis elegans
Exon133602   192   IV: 8391326-8391517 Caenorhabditis elegans
Exon133605   369   IV: 8391644-8392012 Caenorhabditis elegans
Exon133608   189   IV: 8392095-8392283 Caenorhabditis elegans
Exon133611   366   IV: 8392441-8392806 Caenorhabditis elegans
Exon133614   189   IV: 8392855-8393043 Caenorhabditis elegans
Exon133616   226   IV: 8393194-8393419 Caenorhabditis elegans
Exon133620   91   IV: 8393654-8393744 Caenorhabditis elegans
Exon133624   103   IV: 8393798-8393900 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2096.11.3 8388853 8393900 -1

1 Sequence

Length
3078

1 Sequence Ontology Term

Identifier Name Description
transcript