WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M116.5.1 Sequence Name  M116.5.1
Length (nt)  3444   Chromosome Location  IV: 8414265-8421061
Chromosome . Primary Identifier  IV Chromosome Location . Start  8414265
Chromosome Location . End  8421061 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M116.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019792 M116.5 M116.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M116.5 M116.5 3063   IV: 8414593-8414635

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:M116.5.1 8414265 8421061 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133649   371   IV: 8414265-8414635 Caenorhabditis elegans
Exon133650   204   IV: 8414958-8415161 Caenorhabditis elegans
Exon133651   338   IV: 8415735-8416072 Caenorhabditis elegans
Exon133652   120   IV: 8416497-8416616 Caenorhabditis elegans
Exon133653   366   IV: 8416668-8417033 Caenorhabditis elegans
Exon133654   192   IV: 8417112-8417303 Caenorhabditis elegans
Exon133655   369   IV: 8417430-8417798 Caenorhabditis elegans
Exon133656   189   IV: 8417881-8418069 Caenorhabditis elegans
Exon133657   366   IV: 8418210-8418575 Caenorhabditis elegans
Exon133658   189   IV: 8418624-8418812 Caenorhabditis elegans
Exon133659   117   IV: 8418963-8419079 Caenorhabditis elegans
Exon133660   63   IV: 8419438-8419500 Caenorhabditis elegans
Exon133661   174   IV: 8419912-8420085 Caenorhabditis elegans
Exon133662   78   IV: 8420226-8420303 Caenorhabditis elegans
Exon133663   90   IV: 8420384-8420473 Caenorhabditis elegans
Exon133664   62   IV: 8420799-8420860 Caenorhabditis elegans
Exon133665   156   IV: 8420906-8421061 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:M116.5.1 8414265 8421061 -1

1 Sequence

Length
3444

1 Sequence Ontology Term

Identifier Name Description
transcript