WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023488 Gene Name  srz-84
Sequence Name  ? T26A8.5 Organism  Caenorhabditis elegans
Automated Description  Is affected by etr-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  IV :3.78973 ±0.010672 Length (nt)  ? 2094
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023488

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

39 Allele

Public Name
gk964278
gk964500
gk962765
gk963722
gk963417
WBVar02020981
WBVar00191071
WBVar00191070
gk933179
gk590562
gk564673
gk550526
gk399779
gk659950
gk772966
gk506069
gk448684
gk580712
gk726399
gk568945
gk457742
gk963654
gk207226
WBVar01516366
WBVar01730141
WBVar02114899
WBVar02057992
WBVar02057991
WBVar02057990
gk2231

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00023488 8422053 8424146 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_8424147..8425053   907 IV: 8424147-8425053 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. WBPaper00060811:L1_vs_adult_upregulated_neural
  Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
  Transcripts of noncoding genes that showed significantly decreased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00023488 8422053 8424146 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
2094

1 Sequence Ontology Term