WormMine: Gene WBGene00219723

• WormBase Gene ID: WBGene00219723
• Gene Name: linc-135
• Sequence Name: T01B11.10
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including cox-5B; glp-1; and mett-10 based on RNA-seq and microarray studies.
• Biotype: SO:0001641
• Genetic Position: IV :3.81077±
• Length (nt): 3740

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219723

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:T01B11.10	T01B11.10	1105	IV: 8453296-8457035

Other

0 CDSs

1 RNAi Result

• WBRNAi00052072

44 Allele

• gk964278
• gk964500
• gk962765
• gk963722
• gk963417
• WBVar01730149
• WBVar01730150
• WBVar02046047
• WBVar01854165
• WBVar01688027
• WBVar01854164
• WBVar01854163
• WBVar02114900
• WBVar01453356
• WBVar01453358
• WBVar01453357
• WBVar00270683
• gk536358
• gk644838
• gk569436
• gk207271
• gk925372
• gk207272
• gk207269
• gk207270
• gk509736
• gk207268
• gk335169
• gk466698
• gk698701

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219723
• Start: 8453296
• End: 8457035
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_8457036..8457279
• Length (nt): 244
• Chromosome Location: IV: 8457036-8457279
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression glp-1(e2141); TU3401 animals comparing to in TU3401 animals.	Fold change > 2, FDR < 0.01.	WBPaper00065993:glp-1(e2141)_upregulated
	Transcripts that showed significantly increased expression in cco-1(RNAi) comparing to in vector control animals.	The limma package47 was used for differential expression. Genes with a Benjamini-Hochberg adjusted P-value <0.05 and an absolute log fold change of 2 were considered differentially expressed.	WBPaper00053402:cco-1(RNAi)_upregulated
	Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_downregulated
	Transcripts that showed significantly altered expression at AFD neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain.	RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis.	WBPaper00061902:camt-1(ok515)_regulated_AFD
	Transcripts that showed significantly increased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on standard (OP50) plates.	DESeq2, p-value < 0.05, fold change > 2.	WBPaper00061357:mett-10(ok2204)_upregulated_OP50

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219723
• Start: 8453296
• End: 8457035
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 3740

1 Sequence Ontology Term