WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C28C12.10b.1 Sequence Name  C28C12.10b.1
Length (nt)  3276   Chromosome Location  IV: 8503495-8510547
Chromosome . Primary Identifier  IV Chromosome Location . Start  8503495
Chromosome Location . End  8510547 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C28C12.10b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006450 tag-77 C28C12.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C28C12.10b C28C12.10b 3090   IV: 8503674-8503977

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C28C12.10b.1 8503495 8510547 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133859   483   IV: 8503495-8503977 Caenorhabditis elegans
Exon133865   202   IV: 8504057-8504258 Caenorhabditis elegans
Exon133871   100   IV: 8504312-8504411 Caenorhabditis elegans
Exon133877   717   IV: 8504492-8505208 Caenorhabditis elegans
Exon133883   249   IV: 8505277-8505525 Caenorhabditis elegans
Exon133889   321   IV: 8505569-8505889 Caenorhabditis elegans
Exon133895   276   IV: 8505944-8506219 Caenorhabditis elegans
Exon133901   100   IV: 8506368-8506467 Caenorhabditis elegans
Exon133907   225   IV: 8506792-8507016 Caenorhabditis elegans
Exon133915   239   IV: 8507093-8507331 Caenorhabditis elegans
Exon133921   215   IV: 8509187-8509401 Caenorhabditis elegans
Exon133922   149   IV: 8510399-8510547 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C28C12.10b.1 8503495 8510547 -1

1 Sequence

Length
3276

1 Sequence Ontology Term

Identifier Name Description
transcript