WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C28C12.10e.1 Sequence Name  C28C12.10e.1
Length (nt)  2547   Chromosome Location  IV: 8503674-8507145
Chromosome . Primary Identifier  IV Chromosome Location . Start  8503674
Chromosome Location . End  8507145 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C28C12.10e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006450 tag-77 C28C12.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C28C12.10e C28C12.10e 2547   IV: 8503674-8503977

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C28C12.10e.1 8503674 8507145 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133860   304   IV: 8503674-8503977 Caenorhabditis elegans
Exon133868   202   IV: 8504057-8504258 Caenorhabditis elegans
Exon133874   100   IV: 8504312-8504411 Caenorhabditis elegans
Exon133880   717   IV: 8504492-8505208 Caenorhabditis elegans
Exon133886   249   IV: 8505277-8505525 Caenorhabditis elegans
Exon133892   321   IV: 8505569-8505889 Caenorhabditis elegans
Exon133898   276   IV: 8505944-8506219 Caenorhabditis elegans
Exon133904   100   IV: 8506368-8506467 Caenorhabditis elegans
Exon133910   225   IV: 8506792-8507016 Caenorhabditis elegans
Exon133912   53   IV: 8507093-8507145 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C28C12.10e.1 8503674 8507145 -1

1 Sequence

Length
2547

1 Sequence Ontology Term

Identifier Name Description
transcript