WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C28C12.10f.1 Sequence Name  C28C12.10f.1
Length (nt)  2541   Chromosome Location  IV: 8503674-8507145
Chromosome . Primary Identifier  IV Chromosome Location . Start  8503674
Chromosome Location . End  8507145 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C28C12.10f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006450 tag-77 C28C12.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C28C12.10f C28C12.10f 2541   IV: 8503674-8503971

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C28C12.10f.1 8503674 8507145 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133861   298   IV: 8503674-8503971 Caenorhabditis elegans
Exon133869   202   IV: 8504057-8504258 Caenorhabditis elegans
Exon133875   100   IV: 8504312-8504411 Caenorhabditis elegans
Exon133881   717   IV: 8504492-8505208 Caenorhabditis elegans
Exon133887   249   IV: 8505277-8505525 Caenorhabditis elegans
Exon133893   321   IV: 8505569-8505889 Caenorhabditis elegans
Exon133899   276   IV: 8505944-8506219 Caenorhabditis elegans
Exon133905   100   IV: 8506368-8506467 Caenorhabditis elegans
Exon133911   225   IV: 8506792-8507016 Caenorhabditis elegans
Exon133913   53   IV: 8507093-8507145 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C28C12.10f.1 8503674 8507145 -1

1 Sequence

Length
2541

1 Sequence Ontology Term

Identifier Name Description
transcript