WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09G4.2a.1 Sequence Name  C09G4.2a.1
Length (nt)  2263   Chromosome Location  IV: 8522603-8538187
Chromosome . Primary Identifier  IV Chromosome Location . Start  8522603
Chromosome Location . End  8538187 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09G4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015650 pkg-2 C09G4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09G4.2a C09G4.2a 1746   IV: 8522672-8522736

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09G4.2a.1 8522603 8538187 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133939   134   IV: 8522603-8522736 Caenorhabditis elegans
Exon133940   167   IV: 8523293-8523459 Caenorhabditis elegans
Exon133942   114   IV: 8523520-8523633 Caenorhabditis elegans
Exon133945   239   IV: 8525022-8525260 Caenorhabditis elegans
Exon133947   74   IV: 8532085-8532158 Caenorhabditis elegans
Exon133949   123   IV: 8535856-8535978 Caenorhabditis elegans
Exon133952   222   IV: 8536341-8536562 Caenorhabditis elegans
Exon133955   90   IV: 8536618-8536707 Caenorhabditis elegans
Exon133958   306   IV: 8536905-8537210 Caenorhabditis elegans
Exon133961   78   IV: 8537263-8537340 Caenorhabditis elegans
Exon133966   716   IV: 8537472-8538187 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09G4.2a.1 8522603 8538187 1

1 Sequence

Length
2263

1 Sequence Ontology Term

Identifier Name Description
transcript