WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42A9.2.1 Sequence Name  F42A9.2.1
Length (nt)  3715   Chromosome Location  IV: 8620683-8626162
Chromosome . Primary Identifier  IV Chromosome Location . Start  8620683
Chromosome Location . End  8626162 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42A9.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003034 lin-49 F42A9.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42A9.2 F42A9.2 3129   IV: 8620762-8620974

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42A9.2.1 8620683 8626162 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon134163   292   IV: 8620683-8620974 Caenorhabditis elegans
Exon134164   125   IV: 8621025-8621149 Caenorhabditis elegans
Exon134165   199   IV: 8621463-8621661 Caenorhabditis elegans
Exon134166   650   IV: 8621737-8622386 Caenorhabditis elegans
Exon134167   310   IV: 8622717-8623026 Caenorhabditis elegans
Exon134168   199   IV: 8623147-8623345 Caenorhabditis elegans
Exon134169   795   IV: 8623582-8624376 Caenorhabditis elegans
Exon134170   352   IV: 8624462-8624813 Caenorhabditis elegans
Exon134171   252   IV: 8624965-8625216 Caenorhabditis elegans
Exon134172   541   IV: 8625622-8626162 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42A9.2.1 8620683 8626162 1

1 Sequence

Length
3715

1 Sequence Ontology Term

Identifier Name Description
transcript