WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C49C8.5.1 Sequence Name  C49C8.5.1
Length (nt)  1386   Chromosome Location  IV: 8648666-8653664
Chromosome . Primary Identifier  IV Chromosome Location . Start  8648666
Chromosome Location . End  8653664 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C49C8.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016769 C49C8.5 C49C8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C49C8.5 C49C8.5 1356   IV: 8648690-8648855

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C49C8.5.1 8648666 8653664 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon134264   190   IV: 8648666-8648855 Caenorhabditis elegans
Exon134266   78   IV: 8648900-8648977 Caenorhabditis elegans
Exon134267   69   IV: 8649086-8649154 Caenorhabditis elegans
Exon134268   58   IV: 8649204-8649261 Caenorhabditis elegans
Exon134269   79   IV: 8649335-8649413 Caenorhabditis elegans
Exon134270   208   IV: 8649473-8649680 Caenorhabditis elegans
Exon134271   139   IV: 8649729-8649867 Caenorhabditis elegans
Exon134272   107   IV: 8649919-8650025 Caenorhabditis elegans
Exon134273   134   IV: 8650162-8650295 Caenorhabditis elegans
Exon134278   121   IV: 8652979-8653099 Caenorhabditis elegans
Exon134279   146   IV: 8653334-8653479 Caenorhabditis elegans
Exon134280   57   IV: 8653608-8653664 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C49C8.5.1 8648666 8653664 -1

1 Sequence

Length
1386

1 Sequence Ontology Term

Identifier Name Description
transcript