WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08B4.2a.1 Sequence Name  F08B4.2a.1
Length (nt)  4920   Chromosome Location  IV: 8668935-8676611
Chromosome . Primary Identifier  IV Chromosome Location . Start  8668935
Chromosome Location . End  8676611 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08B4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000397 cdh-5 F08B4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08B4.2a F08B4.2a 4350   IV: 8669142-8669216

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F08B4.2a.1 8668935 8676611 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon134276   282   IV: 8668935-8669216 Caenorhabditis elegans
Exon134280   147   IV: 8669334-8669480 Caenorhabditis elegans
Exon134284   219   IV: 8669564-8669782 Caenorhabditis elegans
Exon134288   271   IV: 8669835-8670105 Caenorhabditis elegans
Exon134292   157   IV: 8670223-8670379 Caenorhabditis elegans
Exon134296   303   IV: 8670438-8670740 Caenorhabditis elegans
Exon134300   184   IV: 8670786-8670969 Caenorhabditis elegans
Exon134304   222   IV: 8671042-8671263 Caenorhabditis elegans
Exon134308   429   IV: 8671575-8672003 Caenorhabditis elegans
Exon134310   190   IV: 8672298-8672487 Caenorhabditis elegans
Exon134314   137   IV: 8672540-8672676 Caenorhabditis elegans
Exon134318   180   IV: 8672722-8672901 Caenorhabditis elegans
Exon134322   132   IV: 8672973-8673104 Caenorhabditis elegans
Exon134326   161   IV: 8673153-8673313 Caenorhabditis elegans
Exon134330   198   IV: 8673603-8673800 Caenorhabditis elegans
Exon134334   184   IV: 8673851-8674034 Caenorhabditis elegans
Exon134338   165   IV: 8674084-8674248 Caenorhabditis elegans
Exon134342   231   IV: 8674332-8674562 Caenorhabditis elegans
Exon134346   153   IV: 8674654-8674806 Caenorhabditis elegans
Exon134350   476   IV: 8675044-8675519 Caenorhabditis elegans
Exon134354   57   IV: 8675575-8675631 Caenorhabditis elegans
Exon134361   442   IV: 8676170-8676611 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F08B4.2a.1 8668935 8676611 1

1 Sequence

Length
4920

1 Sequence Ontology Term

Identifier Name Description
transcript