WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08B4.2a.1 Sequence Name  F08B4.2a.1
Length (nt)  4920   Chromosome Location  IV: 8668935-8676611
Chromosome . Primary Identifier  IV Chromosome Location . Start  8668935
Chromosome Location . End  8676611 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08B4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000397 cdh-5 F08B4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08B4.2a F08B4.2a 4350   IV: 8669142-8669216

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F08B4.2a.1 8668935 8676611 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon134297   282   IV: 8668935-8669216 Caenorhabditis elegans
Exon134301   147   IV: 8669334-8669480 Caenorhabditis elegans
Exon134305   219   IV: 8669564-8669782 Caenorhabditis elegans
Exon134309   271   IV: 8669835-8670105 Caenorhabditis elegans
Exon134313   157   IV: 8670223-8670379 Caenorhabditis elegans
Exon134317   303   IV: 8670438-8670740 Caenorhabditis elegans
Exon134321   184   IV: 8670786-8670969 Caenorhabditis elegans
Exon134325   222   IV: 8671042-8671263 Caenorhabditis elegans
Exon134329   429   IV: 8671575-8672003 Caenorhabditis elegans
Exon134331   190   IV: 8672298-8672487 Caenorhabditis elegans
Exon134335   137   IV: 8672540-8672676 Caenorhabditis elegans
Exon134339   180   IV: 8672722-8672901 Caenorhabditis elegans
Exon134343   132   IV: 8672973-8673104 Caenorhabditis elegans
Exon134347   161   IV: 8673153-8673313 Caenorhabditis elegans
Exon134351   198   IV: 8673603-8673800 Caenorhabditis elegans
Exon134355   184   IV: 8673851-8674034 Caenorhabditis elegans
Exon134359   165   IV: 8674084-8674248 Caenorhabditis elegans
Exon134363   231   IV: 8674332-8674562 Caenorhabditis elegans
Exon134367   153   IV: 8674654-8674806 Caenorhabditis elegans
Exon134371   476   IV: 8675044-8675519 Caenorhabditis elegans
Exon134375   57   IV: 8675575-8675631 Caenorhabditis elegans
Exon134382   442   IV: 8676170-8676611 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F08B4.2a.1 8668935 8676611 1

1 Sequence

Length
4920

1 Sequence Ontology Term

Identifier Name Description
transcript