WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F20C5.2a.1 Sequence Name  F20C5.2a.1
Length (nt)  2419   Chromosome Location  IV: 8756735-8762066
Chromosome . Primary Identifier  IV Chromosome Location . Start  8756735
Chromosome Location . End  8762066 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F20C5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002222 klp-11 F20C5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F20C5.2a F20C5.2a 2349   IV: 8756735-8756807

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F20C5.2a.1 8756735 8762066 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon134710   73   IV: 8756735-8756807 Caenorhabditis elegans
Exon134715   89   IV: 8757137-8757225 Caenorhabditis elegans
Exon134721   146   IV: 8757508-8757653 Caenorhabditis elegans
Exon134726   103   IV: 8758147-8758249 Caenorhabditis elegans
Exon134728   116   IV: 8758820-8758935 Caenorhabditis elegans
Exon134730   143   IV: 8759026-8759168 Caenorhabditis elegans
Exon134732   98   IV: 8759387-8759484 Caenorhabditis elegans
Exon134734   961   IV: 8759536-8760496 Caenorhabditis elegans
Exon134736   71   IV: 8760548-8760618 Caenorhabditis elegans
Exon134738   93   IV: 8760671-8760763 Caenorhabditis elegans
Exon134740   250   IV: 8760807-8761056 Caenorhabditis elegans
Exon134742   105   IV: 8761196-8761300 Caenorhabditis elegans
Exon134744   56   IV: 8761350-8761405 Caenorhabditis elegans
Exon134746   115   IV: 8761952-8762066 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F20C5.2a.1 8756735 8762066 -1

1 Sequence

Length
2419

1 Sequence Ontology Term

Identifier Name Description
transcript