WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T11B7.4d.1 Sequence Name  T11B7.4d.1
Length (nt)  4487   Chromosome Location  IV: 8852500-8862228
Chromosome . Primary Identifier  IV Chromosome Location . Start  8852500
Chromosome Location . End  8862228 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T11B7.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001132 alp-1 T11B7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T11B7.4d T11B7.4d 4275   IV: 8852514-8852612

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T11B7.4d.1 8852500 8862228 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135079   113   IV: 8852500-8852612 Caenorhabditis elegans
Exon135083   146   IV: 8853119-8853264 Caenorhabditis elegans
Exon135089   109   IV: 8854660-8854768 Caenorhabditis elegans
Exon135094   158   IV: 8854899-8855056 Caenorhabditis elegans
Exon135102   171   IV: 8856475-8856645 Caenorhabditis elegans
Exon135107   104   IV: 8856719-8856822 Caenorhabditis elegans
Exon135112   76   IV: 8856876-8856951 Caenorhabditis elegans
Exon135117   171   IV: 8857003-8857173 Caenorhabditis elegans
Exon135122   227   IV: 8857219-8857445 Caenorhabditis elegans
Exon135124   1746   IV: 8857605-8859350 Caenorhabditis elegans
Exon135126   400   IV: 8859482-8859881 Caenorhabditis elegans
Exon135128   191   IV: 8860008-8860198 Caenorhabditis elegans
Exon135133   178   IV: 8860546-8860723 Caenorhabditis elegans
Exon135137   260   IV: 8860966-8861225 Caenorhabditis elegans
Exon135141   164   IV: 8861276-8861439 Caenorhabditis elegans
Exon135145   273   IV: 8861956-8862228 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T11B7.4d.1 8852500 8862228 1

1 Sequence

Length
4487

1 Sequence Ontology Term

Identifier Name Description
transcript