WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T11B7.4c.1 Sequence Name  T11B7.4c.1
Length (nt)  2399   Chromosome Location  IV: 8854530-8862097
Chromosome . Primary Identifier  IV Chromosome Location . Start  8854530
Chromosome Location . End  8862097 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T11B7.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001132 alp-1 T11B7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T11B7.4c T11B7.4c 2316   IV: 8854546-8854577

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T11B7.4c.1 8854530 8862097 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135085   48   IV: 8854530-8854577 Caenorhabditis elegans
Exon135088   109   IV: 8854660-8854768 Caenorhabditis elegans
Exon135093   158   IV: 8854899-8855056 Caenorhabditis elegans
Exon135101   171   IV: 8856475-8856645 Caenorhabditis elegans
Exon135106   104   IV: 8856719-8856822 Caenorhabditis elegans
Exon135111   76   IV: 8856876-8856951 Caenorhabditis elegans
Exon135116   171   IV: 8857003-8857173 Caenorhabditis elegans
Exon135121   227   IV: 8857219-8857445 Caenorhabditis elegans
Exon135125   400   IV: 8859482-8859881 Caenorhabditis elegans
Exon135127   191   IV: 8860008-8860198 Caenorhabditis elegans
Exon135132   178   IV: 8860546-8860723 Caenorhabditis elegans
Exon135136   260   IV: 8860966-8861225 Caenorhabditis elegans
Exon135140   164   IV: 8861276-8861439 Caenorhabditis elegans
Exon135143   142   IV: 8861956-8862097 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T11B7.4c.1 8854530 8862097 1

1 Sequence

Length
2399

1 Sequence Ontology Term

Identifier Name Description
transcript