WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09G9.4.1 Sequence Name  C09G9.4.1
Length (nt)  1959   Chromosome Location  IV: 8874147-8877022
Chromosome . Primary Identifier  IV Chromosome Location . Start  8874147
Chromosome Location . End  8877022 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09G9.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006409 hdl-2 C09G9.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09G9.4 C09G9.4 1836   IV: 8874270-8874364

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09G9.4.1 8874147 8877022 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135180   55   IV: 8874147-8874201 Caenorhabditis elegans
Exon135181   117   IV: 8874248-8874364 Caenorhabditis elegans
Exon135182   190   IV: 8874541-8874730 Caenorhabditis elegans
Exon135183   148   IV: 8874780-8874927 Caenorhabditis elegans
Exon135184   101   IV: 8874978-8875078 Caenorhabditis elegans
Exon135185   102   IV: 8875124-8875225 Caenorhabditis elegans
Exon135186   467   IV: 8875513-8875979 Caenorhabditis elegans
Exon135187   78   IV: 8876023-8876100 Caenorhabditis elegans
Exon135188   110   IV: 8876146-8876255 Caenorhabditis elegans
Exon135189   197   IV: 8876299-8876495 Caenorhabditis elegans
Exon135190   99   IV: 8876540-8876638 Caenorhabditis elegans
Exon135191   118   IV: 8876684-8876801 Caenorhabditis elegans
Exon135192   177   IV: 8876846-8877022 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09G9.4.1 8874147 8877022 1

1 Sequence

Length
1959

1 Sequence Ontology Term

Identifier Name Description
transcript