WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09G9.6.1 Sequence Name  C09G9.6.1
Length (nt)  1801   Chromosome Location  IV: 8888976-8890999
Chromosome . Primary Identifier  IV Chromosome Location . Start  8888976
Chromosome Location . End  8890999 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09G9.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003864 oma-1 C09G9.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09G9.6 C09G9.6 1224   IV: 8889086-8889123

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09G9.6.1 8888976 8890999 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135222   148   IV: 8888976-8889123 Caenorhabditis elegans
Exon135223   168   IV: 8889172-8889339 Caenorhabditis elegans
Exon135224   231   IV: 8889386-8889616 Caenorhabditis elegans
Exon135225   148   IV: 8889659-8889806 Caenorhabditis elegans
Exon135226   232   IV: 8889851-8890082 Caenorhabditis elegans
Exon135227   874   IV: 8890126-8890999 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09G9.6.1 8888976 8890999 1

1 Sequence

Length
1801

1 Sequence Ontology Term

Identifier Name Description
transcript