WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53B4.4i.1 Sequence Name  C53B4.4i.1
Length (nt)  4653   Chromosome Location  IV: 8975526-8984571
Chromosome . Primary Identifier  IV Chromosome Location . Start  8975526
Chromosome Location . End  8984571 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53B4.4i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53B4.4i C53B4.4i 3969   IV: 8975637-8975681

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4i.1 8975526 8984571 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135576   156   IV: 8975526-8975681 Caenorhabditis elegans
Exon135593   230   IV: 8975797-8976026 Caenorhabditis elegans
Exon135604   175   IV: 8976113-8976287 Caenorhabditis elegans
Exon135615   198   IV: 8976396-8976593 Caenorhabditis elegans
Exon135626   160   IV: 8976638-8976797 Caenorhabditis elegans
Exon135637   468   IV: 8977056-8977523 Caenorhabditis elegans
Exon135645   177   IV: 8977730-8977906 Caenorhabditis elegans
Exon135656   102   IV: 8978586-8978687 Caenorhabditis elegans
Exon135668   347   IV: 8980361-8980707 Caenorhabditis elegans
Exon135679   480   IV: 8980879-8981358 Caenorhabditis elegans
Exon135686   389   IV: 8981695-8982083 Caenorhabditis elegans
Exon135701   248   IV: 8982146-8982393 Caenorhabditis elegans
Exon135712   306   IV: 8982748-8983053 Caenorhabditis elegans
Exon135723   109   IV: 8983108-8983216 Caenorhabditis elegans
Exon135734   160   IV: 8983263-8983422 Caenorhabditis elegans
Exon135745   178   IV: 8983470-8983647 Caenorhabditis elegans
Exon135758   146   IV: 8983703-8983848 Caenorhabditis elegans
Exon135762   624   IV: 8983948-8984571 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4i.1 8975526 8984571 1

1 Sequence

Length
4653

1 Sequence Ontology Term

Identifier Name Description
transcript