WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53B4.4h.1 Sequence Name  C53B4.4h.1
Length (nt)  4660   Chromosome Location  IV: 8975526-8984569
Chromosome . Primary Identifier  IV Chromosome Location . Start  8975526
Chromosome Location . End  8984569 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53B4.4h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53B4.4h C53B4.4h 3978   IV: 8975637-8975681

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4h.1 8975526 8984569 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135579   156   IV: 8975526-8975681 Caenorhabditis elegans
Exon135592   230   IV: 8975797-8976026 Caenorhabditis elegans
Exon135603   175   IV: 8976113-8976287 Caenorhabditis elegans
Exon135614   198   IV: 8976396-8976593 Caenorhabditis elegans
Exon135625   160   IV: 8976638-8976797 Caenorhabditis elegans
Exon135636   468   IV: 8977056-8977523 Caenorhabditis elegans
Exon135644   177   IV: 8977730-8977906 Caenorhabditis elegans
Exon135655   102   IV: 8978586-8978687 Caenorhabditis elegans
Exon135667   347   IV: 8980361-8980707 Caenorhabditis elegans
Exon135678   480   IV: 8980879-8981358 Caenorhabditis elegans
Exon135685   389   IV: 8981695-8982083 Caenorhabditis elegans
Exon135700   248   IV: 8982146-8982393 Caenorhabditis elegans
Exon135711   306   IV: 8982748-8983053 Caenorhabditis elegans
Exon135722   109   IV: 8983108-8983216 Caenorhabditis elegans
Exon135733   160   IV: 8983263-8983422 Caenorhabditis elegans
Exon135744   178   IV: 8983470-8983647 Caenorhabditis elegans
Exon135751   155   IV: 8983694-8983848 Caenorhabditis elegans
Exon135761   622   IV: 8983948-8984569 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4h.1 8975526 8984569 1

1 Sequence

Length
4660

1 Sequence Ontology Term

Identifier Name Description
transcript