WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53B4.4e.1 Sequence Name  C53B4.4e.1
Length (nt)  4664   Chromosome Location  IV: 8975526-8984579
Chromosome . Primary Identifier  IV Chromosome Location . Start  8975526
Chromosome Location . End  8984579 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53B4.4e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53B4.4e C53B4.4e 3972   IV: 8975637-8975681

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4e.1 8975526 8984579 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135578   156   IV: 8975526-8975681 Caenorhabditis elegans
Exon135589   230   IV: 8975797-8976026 Caenorhabditis elegans
Exon135600   175   IV: 8976113-8976287 Caenorhabditis elegans
Exon135611   198   IV: 8976396-8976593 Caenorhabditis elegans
Exon135622   160   IV: 8976638-8976797 Caenorhabditis elegans
Exon135633   468   IV: 8977056-8977523 Caenorhabditis elegans
Exon135643   177   IV: 8977730-8977906 Caenorhabditis elegans
Exon135652   102   IV: 8978586-8978687 Caenorhabditis elegans
Exon135664   347   IV: 8980361-8980707 Caenorhabditis elegans
Exon135675   480   IV: 8980879-8981358 Caenorhabditis elegans
Exon135690   383   IV: 8981701-8982083 Caenorhabditis elegans
Exon135697   248   IV: 8982146-8982393 Caenorhabditis elegans
Exon135708   306   IV: 8982748-8983053 Caenorhabditis elegans
Exon135719   109   IV: 8983108-8983216 Caenorhabditis elegans
Exon135730   160   IV: 8983263-8983422 Caenorhabditis elegans
Exon135741   178   IV: 8983470-8983647 Caenorhabditis elegans
Exon135749   155   IV: 8983694-8983848 Caenorhabditis elegans
Exon135764   632   IV: 8983948-8984579 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4e.1 8975526 8984579 1

1 Sequence

Length
4664

1 Sequence Ontology Term

Identifier Name Description
transcript