WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53B4.4a.1 Sequence Name  C53B4.4a.1
Length (nt)  4634   Chromosome Location  IV: 8975532-8984571
Chromosome . Primary Identifier  IV Chromosome Location . Start  8975532
Chromosome Location . End  8984571 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53B4.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53B4.4a C53B4.4a 4083   IV: 8975637-8975681

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4a.1 8975532 8984571 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135580   150   IV: 8975532-8975681 Caenorhabditis elegans
Exon135586   230   IV: 8975797-8976026 Caenorhabditis elegans
Exon135597   175   IV: 8976113-8976287 Caenorhabditis elegans
Exon135608   198   IV: 8976396-8976593 Caenorhabditis elegans
Exon135619   160   IV: 8976638-8976797 Caenorhabditis elegans
Exon135630   468   IV: 8977056-8977523 Caenorhabditis elegans
Exon135641   177   IV: 8977730-8977906 Caenorhabditis elegans
Exon135649   102   IV: 8978586-8978687 Caenorhabditis elegans
Exon135661   347   IV: 8980361-8980707 Caenorhabditis elegans
Exon135672   480   IV: 8980879-8981358 Caenorhabditis elegans
Exon135688   383   IV: 8981701-8982083 Caenorhabditis elegans
Exon135694   248   IV: 8982146-8982393 Caenorhabditis elegans
Exon135705   306   IV: 8982748-8983053 Caenorhabditis elegans
Exon135716   109   IV: 8983108-8983216 Caenorhabditis elegans
Exon135727   160   IV: 8983263-8983422 Caenorhabditis elegans
Exon135738   178   IV: 8983470-8983647 Caenorhabditis elegans
Exon135754   146   IV: 8983703-8983848 Caenorhabditis elegans
Exon135766   617   IV: 8983955-8984571 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4a.1 8975532 8984571 1

1 Sequence

Length
4634

1 Sequence Ontology Term

Identifier Name Description
transcript