WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53B4.4b.1 Sequence Name  C53B4.4b.1
Length (nt)  4639   Chromosome Location  IV: 8975533-8984571
Chromosome . Primary Identifier  IV Chromosome Location . Start  8975533
Chromosome Location . End  8984571 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53B4.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53B4.4b C53B4.4b 4089   IV: 8975637-8975681

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4b.1 8975533 8984571 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135581   149   IV: 8975533-8975681 Caenorhabditis elegans
Exon135587   230   IV: 8975797-8976026 Caenorhabditis elegans
Exon135598   175   IV: 8976113-8976287 Caenorhabditis elegans
Exon135609   198   IV: 8976396-8976593 Caenorhabditis elegans
Exon135620   160   IV: 8976638-8976797 Caenorhabditis elegans
Exon135631   468   IV: 8977056-8977523 Caenorhabditis elegans
Exon135642   177   IV: 8977730-8977906 Caenorhabditis elegans
Exon135650   102   IV: 8978586-8978687 Caenorhabditis elegans
Exon135662   347   IV: 8980361-8980707 Caenorhabditis elegans
Exon135673   480   IV: 8980879-8981358 Caenorhabditis elegans
Exon135683   389   IV: 8981695-8982083 Caenorhabditis elegans
Exon135695   248   IV: 8982146-8982393 Caenorhabditis elegans
Exon135706   306   IV: 8982748-8983053 Caenorhabditis elegans
Exon135717   109   IV: 8983108-8983216 Caenorhabditis elegans
Exon135728   160   IV: 8983263-8983422 Caenorhabditis elegans
Exon135739   178   IV: 8983470-8983647 Caenorhabditis elegans
Exon135755   146   IV: 8983703-8983848 Caenorhabditis elegans
Exon135767   617   IV: 8983955-8984571 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4b.1 8975533 8984571 1

1 Sequence

Length
4639

1 Sequence Ontology Term

Identifier Name Description
transcript