WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53B4.4f.1 Sequence Name  C53B4.4f.1
Length (nt)  3795   Chromosome Location  IV: 8975637-8983998
Chromosome . Primary Identifier  IV Chromosome Location . Start  8975637
Chromosome Location . End  8983998 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53B4.4f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53B4.4f C53B4.4f 3795   IV: 8975637-8975681

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4f.1 8975637 8983998 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135582   45   IV: 8975637-8975681 Caenorhabditis elegans
Exon135590   230   IV: 8975797-8976026 Caenorhabditis elegans
Exon135601   175   IV: 8976113-8976287 Caenorhabditis elegans
Exon135612   198   IV: 8976396-8976593 Caenorhabditis elegans
Exon135623   160   IV: 8976638-8976797 Caenorhabditis elegans
Exon135634   468   IV: 8977056-8977523 Caenorhabditis elegans
Exon135653   102   IV: 8978586-8978687 Caenorhabditis elegans
Exon135665   347   IV: 8980361-8980707 Caenorhabditis elegans
Exon135676   480   IV: 8980879-8981358 Caenorhabditis elegans
Exon135691   383   IV: 8981701-8982083 Caenorhabditis elegans
Exon135698   248   IV: 8982146-8982393 Caenorhabditis elegans
Exon135709   306   IV: 8982748-8983053 Caenorhabditis elegans
Exon135720   109   IV: 8983108-8983216 Caenorhabditis elegans
Exon135731   160   IV: 8983263-8983422 Caenorhabditis elegans
Exon135742   178   IV: 8983470-8983647 Caenorhabditis elegans
Exon135750   155   IV: 8983694-8983848 Caenorhabditis elegans
Exon135760   51   IV: 8983948-8983998 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4f.1 8975637 8983998 1

1 Sequence

Length
3795

1 Sequence Ontology Term

Identifier Name Description
transcript