WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53B4.4d.1 Sequence Name  C53B4.4d.1
Length (nt)  4352   Chromosome Location  IV: 8975637-8984571
Chromosome . Primary Identifier  IV Chromosome Location . Start  8975637
Chromosome Location . End  8984571 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53B4.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53B4.4d C53B4.4d 3906   IV: 8975637-8975681

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4d.1 8975637 8984571 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135584   45   IV: 8975637-8975681 Caenorhabditis elegans
Exon135588   230   IV: 8975797-8976026 Caenorhabditis elegans
Exon135599   175   IV: 8976113-8976287 Caenorhabditis elegans
Exon135610   198   IV: 8976396-8976593 Caenorhabditis elegans
Exon135621   160   IV: 8976638-8976797 Caenorhabditis elegans
Exon135632   468   IV: 8977056-8977523 Caenorhabditis elegans
Exon135651   102   IV: 8978586-8978687 Caenorhabditis elegans
Exon135663   347   IV: 8980361-8980707 Caenorhabditis elegans
Exon135674   480   IV: 8980879-8981358 Caenorhabditis elegans
Exon135689   383   IV: 8981701-8982083 Caenorhabditis elegans
Exon135696   248   IV: 8982146-8982393 Caenorhabditis elegans
Exon135707   306   IV: 8982748-8983053 Caenorhabditis elegans
Exon135718   109   IV: 8983108-8983216 Caenorhabditis elegans
Exon135729   160   IV: 8983263-8983422 Caenorhabditis elegans
Exon135740   178   IV: 8983470-8983647 Caenorhabditis elegans
Exon135756   146   IV: 8983703-8983848 Caenorhabditis elegans
Exon135768   617   IV: 8983955-8984571 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4d.1 8975637 8984571 1

1 Sequence

Length
4352

1 Sequence Ontology Term

Identifier Name Description
transcript