WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53B4.4l.1 Sequence Name  C53B4.4l.1
Length (nt)  4538   Chromosome Location  IV: 8975637-8984571
Chromosome . Primary Identifier  IV Chromosome Location . Start  8975637
Chromosome Location . End  8984571 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53B4.4l.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53B4.4l C53B4.4l 4092   IV: 8975637-8975681

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4l.1 8975637 8984571 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135585   45   IV: 8975637-8975681 Caenorhabditis elegans
Exon135596   230   IV: 8975797-8976026 Caenorhabditis elegans
Exon135607   175   IV: 8976113-8976287 Caenorhabditis elegans
Exon135618   198   IV: 8976396-8976593 Caenorhabditis elegans
Exon135629   160   IV: 8976638-8976797 Caenorhabditis elegans
Exon135640   468   IV: 8977056-8977523 Caenorhabditis elegans
Exon135648   177   IV: 8977730-8977906 Caenorhabditis elegans
Exon135659   102   IV: 8978586-8978687 Caenorhabditis elegans
Exon135671   347   IV: 8980361-8980707 Caenorhabditis elegans
Exon135682   480   IV: 8980879-8981358 Caenorhabditis elegans
Exon135693   383   IV: 8981701-8982083 Caenorhabditis elegans
Exon135704   248   IV: 8982146-8982393 Caenorhabditis elegans
Exon135715   306   IV: 8982748-8983053 Caenorhabditis elegans
Exon135726   109   IV: 8983108-8983216 Caenorhabditis elegans
Exon135737   160   IV: 8983263-8983422 Caenorhabditis elegans
Exon135748   178   IV: 8983470-8983647 Caenorhabditis elegans
Exon135753   155   IV: 8983694-8983848 Caenorhabditis elegans
Exon135769   617   IV: 8983955-8984571 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4l.1 8975637 8984571 1

1 Sequence

Length
4538

1 Sequence Ontology Term

Identifier Name Description
transcript