WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00189986 Gene Name  C53D6.16
Sequence Name  ? C53D6.16 Organism  Caenorhabditis elegans
Automated Description  Is affected by adr-1 based on RNA-seq studies. Biotype  SO:0001268
Genetic Position  Length (nt)  ? 117
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00189986

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C53D6.16 C53D6.16 117   IV: 8999806-8999922
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00030104

8 Allele

Public Name
gk964278
gk964500
gk962765
gk962666
gk208198
WBVar01855206
gk595647
ttTi4296

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00189986 8999806 8999922 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00189986 8999806 8999922 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
117

1 Sequence Ontology Term