WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53D6.3.1 Sequence Name  C53D6.3.1
Length (nt)  1434   Chromosome Location  IV: 9016777-9019186
Chromosome . Primary Identifier  IV Chromosome Location . Start  9016777
Chromosome Location . End  9019186 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53D6.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008280 acc-2 C53D6.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53D6.3 C53D6.3 1338   IV: 9016788-9016875

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C53D6.3.1 9016777 9019186 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135905   99   IV: 9016777-9016875 Caenorhabditis elegans
Exon135906   120   IV: 9017183-9017302 Caenorhabditis elegans
Exon135907   150   IV: 9017344-9017493 Caenorhabditis elegans
Exon135908   100   IV: 9017541-9017640 Caenorhabditis elegans
Exon135909   132   IV: 9017757-9017888 Caenorhabditis elegans
Exon135910   127   IV: 9017940-9018066 Caenorhabditis elegans
Exon135911   113   IV: 9018122-9018234 Caenorhabditis elegans
Exon135912   137   IV: 9018447-9018583 Caenorhabditis elegans
Exon135913   125   IV: 9018630-9018754 Caenorhabditis elegans
Exon135914   171   IV: 9018808-9018978 Caenorhabditis elegans
Exon135915   160   IV: 9019027-9019186 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C53D6.3.1 9016777 9019186 1

1 Sequence

Length
1434

1 Sequence Ontology Term

Identifier Name Description
transcript