WormMine: Gene WBGene00219626

• WormBase Gene ID: WBGene00219626
• Gene Name: linc-157
• Sequence Name: Y73F4A.5
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in DVA and male gonadal cell based on single-cell RNA-seq studies. Is affected by adr-1; ints-5; and ogt-1 based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: IV :4.01747±
• Length (nt): 2909

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219626

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y73F4A.5	Y73F4A.5	2394	IV: 9060779-9063687

Other

0 CDSs

0 RNAi Result

27 Allele

• gk964278
• gk964500
• gk962765
• gk962666
• gk963135
• WBVar02124203
• gk396213
• gk511825
• gk578398
• gk363199
• gk673445
• gk847220
• gk894117
• gk597452
• gk208279
• gk208278
• ttTi7336
• gk922399
• gk860099
• gk561898
• WBVar01855329
• WBVar01855328
• WBVar01855327
• ttTi12013
• WBVar01855332
• WBVar01855331
• WBVar01855330

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219626
• Start: 9060779
• End: 9063687
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_9063688..9065251
• Length (nt): 1564
• Chromosome Location: IV: 9063688-9065251
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
	Transcripts that showed significantly increased expression in ints-5(RNAi) comparing to in N2.	DESeq2 and edgeR.	WBPaper00056284:ints-5(RNAi)_upregulated
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
	Single-cell RNA-Seq cell group 133_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:133_0
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2.	DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5.	WBPaper00055226:adr-1(tm668)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219626
• Start: 9060779
• End: 9063687
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 2909

1 Sequence Ontology Term